NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10081694

Scaffold Ga0209092_10081694


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10081694 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048102Metagenome / Metatranscriptome148Y
F101904Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100816941F101904N/AKTKNATVQDQCIVQSKTKRFTKTQQLNTQLKLATQLNLKHFYAVTLTHYSVC
Ga0209092_100816942F048102GAGGMLIEKDTKEATSKFFAVADIDARAAAAYNTNKQLFNSAQHTTKVELVDSIVKSMFVGYATAYQTSRAATSKRAAHTEVKYFRVVTYAAQQHKKLKAAAVEQLAALGLDLVYKPRTDSYSVHVI

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