NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10042615

Scaffold Ga0209092_10042615


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10042615 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2850
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013230Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100426152F013230GAGMAIFQRKDLPKSNYIVSIVAKIKKGTPIKVKDGKSIKFKKTKDIDMLEKVQTNFQKYGKILDPNGKMASIFTDGKNSFKFTDIDKAPFSGIGGQSRNALGKALADAGELATVMSLRKKIETAKDTKQSIFEKDPEAFSDWFKTFQLTKPAVIKIVGSLNTYDIIHDATDKSAFTTTIEKFLKKVGISKKDSWNPADIFIVKKDKRKEITDALDKMVKTYTASEGLLNMVNDKIYKLYKDGKMYPISLKQITSDKANVDKNNVPGQVKVADYDIQIAKFNCNLSTEGKEIGLFTFNNTTTKKQISMQVRGFPHQYGTAQTEITSDGTPTGGRLGKVSTKVIDNVMSMWKDARIDSIKYFGSPEPFSNFDEKKCKETYDMYETVTRDSKVYNVKKISYKDFKKTIGDLQSAKRPSKVAENMVMKIQGLKIMHFFIKNKKDLSAIMNKMINGAKKINPDNGFFIKIY

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