NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10036883

Scaffold Ga0209092_10036883


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10036883 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3109
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013571Metagenome / Metatranscriptome270Y
F017299Metagenome / Metatranscriptome241Y
F024892Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100368833F017299N/ALHRTLKQLDMHEQPLKITLEFYNKKISTEVDHSDLKLDELHDLWVGILKGMGYHSDIVDEFYE
Ga0209092_100368834F024892N/AMPLRKIHNRKKESFSLHKVEYTDTYTKEMDEEGLAVLKWSMFDSPDKLGSGKYFMESEPVFILDEIFRKERLSGFILQGYVSKTYGDRIAIPENSGHRVGKSIKFKCINKIKRLKFIRGLIQYGIERIQVTNECIYFDTDNYLKDPEFICV
Ga0209092_100368836F013571GAGMEINLILLVPDAMIIGWQYHKPDEQFQYSELNIFLFFGQLQIRWE

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