Scaffold Ga0209092_10036883

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10036883
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3109
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013571	Metagenome / Metatranscriptome	270	Y
F017299	Metagenome / Metatranscriptome	241	Y
F024892	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100368833	F017299	N/A	LHRTLKQLDMHEQPLKITLEFYNKKISTEVDHSDLKLDELHDLWVGILKGMGYHSDIVDEFYE
Ga0209092_100368834	F024892	N/A	MPLRKIHNRKKESFSLHKVEYTDTYTKEMDEEGLAVLKWSMFDSPDKLGSGKYFMESEPVFILDEIFRKERLSGFILQGYVSKTYGDRIAIPENSGHRVGKSIKFKCINKIKRLKFIRGLIQYGIERIQVTNECIYFDTDNYLKDPEFICV
Ga0209092_100368836	F013571	GAG	MEINLILLVPDAMIIGWQYHKPDEQFQYSELNIFLFFGQLQIRWE