Scaffold Ga0209092_10029343

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10029343
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3566
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F079926	Metagenome	115	N
F090391	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100293432	F079926	GGAG	MTTKVVAQPWYDMAIQDKFSIQIDEITFHILDELGKPIINDDLTPMKFRSLLELDFITDYIDLDDLEVI
Ga0209092_100293434	F090391	AGGAG	MKDTVKISRDALEQLTDFVRKDIEVSHLETSDNQDLKYIVDVTDALMSAKYSLELYAQKANAFIEIKYLMFLTEHTQDSFDFIAPDTDWNCLSDMLATNLLASAILEARQAMQVEPEIKEELNK
Ga0209092_100293436	F070557	N/A	MSNEIKQNIIRDLQGDVLSGDHYTINMFSCWLDGSYLGEAHYRKNLAAITECNNNRKKLRSFVINAFTSYIAHDAACSYGYAQKVLVDFLGLDTLNKLNEQLIDNVIEFHSTYCEAA