Scaffold Ga0209092_10023818

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10023818
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4056
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014160	Metagenome / Metatranscriptome	265	N
F025069	Metagenome / Metatranscriptome	203	N
F045196	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100238181	F025069	N/A	MYRILADYITLGVWGMSMANTLTSFDIASASSIAQLVLSILGIVYLGVKIVNESLNGQINREGKRLENERANRDLIDDKNEKL
Ga0209092_1002381811	F045196	N/A	MKVTKKDLKNFKGDKRSKEYRNLKLAYDKTIETKNVDDVGIGTTLEKVFKATGISKLVETFTPEGKDCGCKERKRLLNNSPTFNASQRPKRCMTKEMFEAYDKFVKSREVDKWNAEESKLVFNTYEWVFALRYDTKRMCANCNGTANILKMITASLDKVYETY
Ga0209092_100238187	F014160	N/A	MKTLKDSIQELAAPIIDWESDHDNEVLQQDFVEAQLGEYGIEFSIYASRDISISHGTHFETQDVTVGDAHFDIEILAVFDQEFDDIDITDEEDEMITNVIANFYE