Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10016775 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5084 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (19.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019651 | Metagenome / Metatranscriptome | 228 | Y |
F033962 | Metagenome / Metatranscriptome | 176 | N |
F070137 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1001677511 | F019651 | AGG | MTTLEKFQEEANIKFIQAPSHADIEIGELNTADGYELFYITQDVQNLQFDNEVYYYKPDFDTIMGEILNARISSNVVNVCVYDIEDWFDEYDMLNYLESEMDEESFEIFSYDGQFDINN |
Ga0209092_1001677513 | F033962 | N/A | MTMTELKQYMAEQKRIKVIQWNKEREGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNDTKDRELFTK |
Ga0209092_100167757 | F070137 | N/A | MDLYLKLENRELRNLHENFRDEVWLAFHEGEINNQDEFYDYLHQWIDNACIYTSDCESILFGNMEYCFDEHDLYGRPNNVAQSAFACLYDFITDHIDTPNFEQMETVLNEK |
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