NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10016775

Scaffold Ga0209092_10016775


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10016775 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5084
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019651Metagenome / Metatranscriptome228Y
F033962Metagenome / Metatranscriptome176N
F070137Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1001677511F019651AGGMTTLEKFQEEANIKFIQAPSHADIEIGELNTADGYELFYITQDVQNLQFDNEVYYYKPDFDTIMGEILNARISSNVVNVCVYDIEDWFDEYDMLNYLESEMDEESFEIFSYDGQFDINN
Ga0209092_1001677513F033962N/AMTMTELKQYMAEQKRIKVIQWNKEREGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNDTKDRELFTK
Ga0209092_100167757F070137N/AMDLYLKLENRELRNLHENFRDEVWLAFHEGEINNQDEFYDYLHQWIDNACIYTSDCESILFGNMEYCFDEHDLYGRPNNVAQSAFACLYDFITDHIDTPNFEQMETVLNEK

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