NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10014769

Scaffold Ga0209092_10014769


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10014769 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5509
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F004520Metagenome / Metatranscriptome434Y
F041211Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1001476915F002344N/AMIYDKLKPHIKAKLKENAKEYESVNWLFDKLKQKNNYSDLTIDELRSVCTFGDVFYNDLTQSQIIWGDWLINK
Ga0209092_100147693F041211N/AMSTKVIKGSYNLNTTIDKIAMSEFKMHYYQLGDNEKQWCHDEMVNNDKWLNPPYESEVDKWGF
Ga0209092_100147697F004520N/AMKLTNEEKDEITWRVVDSLYEKLANELEYELEDHSDFTETNDEFMDLFNEMTIKIVKYMRSELFSPGTSEDLELYKR

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