Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10014769 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5509 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002344 | Metagenome / Metatranscriptome | 568 | Y |
F004520 | Metagenome / Metatranscriptome | 434 | Y |
F041211 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1001476915 | F002344 | N/A | MIYDKLKPHIKAKLKENAKEYESVNWLFDKLKQKNNYSDLTIDELRSVCTFGDVFYNDLTQSQIIWGDWLINK |
Ga0209092_100147693 | F041211 | N/A | MSTKVIKGSYNLNTTIDKIAMSEFKMHYYQLGDNEKQWCHDEMVNNDKWLNPPYESEVDKWGF |
Ga0209092_100147697 | F004520 | N/A | MKLTNEEKDEITWRVVDSLYEKLANELEYELEDHSDFTETNDEFMDLFNEMTIKIVKYMRSELFSPGTSEDLELYKR |
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