NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10013725

Scaffold Ga0209092_10013725


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10013725 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5763
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016322Metagenome248N
F017401Metagenome241Y
F056910Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1001372510F017401N/AMVNIGMVTPAGQPQVNKDNELCKKLGTLARTDAHIRQCVERESSNFLTIFLEFIAALSIMLGLIIAAWCLAVIS
Ga0209092_1001372511F016322GGCGGMIRDTNHPLFDEIAYAHVEARARVQSDETNRVGWEEIIDGSAQALRAMMMSMNTKRLRNDTFYAGVIDGQLGVIVRKGAKH
Ga0209092_100137258F056910GAGGMPNKIKPNAMKRSDAADYCGISVSQFGKMIKLGTMPTARNAGGAKIWLRLELEDALTALALDGERDEGCDTNKVFGIAT

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