Scaffold Ga0209092_10013469

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10013469
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5828
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016326	Metagenome	248	N
F036433	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100134694	F016326	GGTGG	MMMNKKKNIAGEMGAKSSQPAKRRQTVDPLERASQKMEGRMKGGDPRKAKRKSMMNSYGL
Ga0209092_100134698	F036433	N/A	SRADHGTPEALRQADGLQFETVDGGRLGSVKRAYISRQTPMDRYKARGLVTQRQYDAAHAFYVLYDKTRQAGRVTSNYDRIIVDGGSGGGINEYAFSDYIKLQQALGMDYVSVVRAVVVECESAAGWAKRYRLPSRMGIEKLRDGLDRLAKIMGVS