Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10011888 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6294 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004629 | Metagenome | 430 | Y |
F004990 | Metagenome | 416 | Y |
F008915 | Metagenome / Metatranscriptome | 326 | Y |
F011253 | Metagenome | 293 | Y |
F013234 | Metagenome | 273 | N |
F035491 | Metagenome | 172 | N |
F053631 | Metagenome | 141 | Y |
F089429 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1001188812 | F089429 | AGGAGG | MKAKDLNIYSIFSRTYKKKMFSFMDFGEIGRLKKNKTIKQVSNVYQFPIHKYYNQKRRVK |
Ga0209092_1001188813 | F053631 | GGAGG | MIRAIYFALCFGIALFGLFVITHINLTLGLSMFVLFIVKFLLMLPQYKEE |
Ga0209092_1001188815 | F035491 | AGGAGG | MNLRTKPTWELRQIVKALTLPISSFLNTDEDNQRLEQAQIVLYERRLKNSQPIKMEVK |
Ga0209092_1001188818 | F013234 | N/A | MNIKYNKTIEKTILNRLCNGESIRKICKDPAMVSWATFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMESISTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ |
Ga0209092_100118882 | F008915 | GAG | MMENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAVAKFLGKKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKSLPGQFYILVIDEAPIFKILGFVNSTHVLGTEKFLTDFGLDRPPCYSLPPEKLTPIFLLKNGTWN |
Ga0209092_100118884 | F004990 | GGA | MYGDPKKPCCVCKKGADLNERGKRYCADHYALHILGKSMNQIEKELGDKD |
Ga0209092_100118887 | F011253 | AGG | MNNRKAEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN |
Ga0209092_100118888 | F004629 | AGGAGG | MIPTRITVDELDNMFQTATYVERYLPSPSIKNKRTEMFSLIDRLYGIGKDKDTYKDDTKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALQELMSLYNNKGYKYICK |
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