Scaffold Ga0209092_10011888

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10011888
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6294
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F035491	Metagenome	172	N
F053631	Metagenome	141	Y
F089429	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1001188812	F089429	AGGAGG	MKAKDLNIYSIFSRTYKKKMFSFMDFGEIGRLKKNKTIKQVSNVYQFPIHKYYNQKRRVK
Ga0209092_1001188813	F053631	GGAGG	MIRAIYFALCFGIALFGLFVITHINLTLGLSMFVLFIVKFLLMLPQYKEE
Ga0209092_1001188815	F035491	AGGAGG	MNLRTKPTWELRQIVKALTLPISSFLNTDEDNQRLEQAQIVLYERRLKNSQPIKMEVK
Ga0209092_1001188818	F013234	N/A	MNIKYNKTIEKTILNRLCNGESIRKICKDPAMVSWATFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMESISTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ
Ga0209092_100118882	F008915	GAG	MMENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAVAKFLGKKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKSLPGQFYILVIDEAPIFKILGFVNSTHVLGTEKFLTDFGLDRPPCYSLPPEKLTPIFLLKNGTWN
Ga0209092_100118884	F004990	GGA	MYGDPKKPCCVCKKGADLNERGKRYCADHYALHILGKSMNQIEKELGDKD
Ga0209092_100118887	F011253	AGG	MNNRKAEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN
Ga0209092_100118888	F004629	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSIKNKRTEMFSLIDRLYGIGKDKDTYKDDTKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALQELMSLYNNKGYKYICK