NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10011888

Scaffold Ga0209092_10011888


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10011888 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6294
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F011253Metagenome293Y
F013234Metagenome273N
F035491Metagenome172N
F053631Metagenome141Y
F089429Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1001188812F089429AGGAGGMKAKDLNIYSIFSRTYKKKMFSFMDFGEIGRLKKNKTIKQVSNVYQFPIHKYYNQKRRVK
Ga0209092_1001188813F053631GGAGGMIRAIYFALCFGIALFGLFVITHINLTLGLSMFVLFIVKFLLMLPQYKEE
Ga0209092_1001188815F035491AGGAGGMNLRTKPTWELRQIVKALTLPISSFLNTDEDNQRLEQAQIVLYERRLKNSQPIKMEVK
Ga0209092_1001188818F013234N/AMNIKYNKTIEKTILNRLCNGESIRKICKDPAMVSWATFSQKLKDSEKLQDQYYTCKKIGIEMVIAEAQDKLMESISTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKPIEIKWQQ
Ga0209092_100118882F008915GAGMMENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAVAKFLGKKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKSLPGQFYILVIDEAPIFKILGFVNSTHVLGTEKFLTDFGLDRPPCYSLPPEKLTPIFLLKNGTWN
Ga0209092_100118884F004990GGAMYGDPKKPCCVCKKGADLNERGKRYCADHYALHILGKSMNQIEKELGDKD
Ga0209092_100118887F011253AGGMNNRKAEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN
Ga0209092_100118888F004629AGGAGGMIPTRITVDELDNMFQTATYVERYLPSPSIKNKRTEMFSLIDRLYGIGKDKDTYKDDTKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALQELMSLYNNKGYKYICK

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