NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10008428

Scaffold Ga0209092_10008428


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10008428 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7818
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007969Metagenome341N
F009493Metagenome317N
F051114Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000842813F009493N/AMKKRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRRLLMVWKEQIPKDKAQITIELSDENPE
Ga0209092_100084282F007969GGAMSVEEAKELTFFLINKNIHAWPQLSKGGACVNVLVEGECYQLNKNENFYGKVCINKK
Ga0209092_100084286F051114N/AMRNKVIDEVLETNAQLFQQLGTDSTKAAIAAAKVQERKNLRAVRAVDPELVDRLLYASDK

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