Scaffold Ga0209092

Basic Information
Taxon OID	3300027833 Open in IMG/M
Scaffold ID	Ga0209092_10006553 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027833 Open in IMG/M

Scaffold ID

Ga0209092_10006553 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9197
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9197

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F036783	Metagenome / Metatranscriptome	169	N
F059965	Metagenome / Metatranscriptome	133	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000655312	F036783	AGGAG	MLEIVRTKYASHVDTRVYMDLGYGEMEVDVEEIEMIDGELSGMAYCHQREIEMYVDHKDCQRALDKYEEENNNEWR
Ga0209092_1000655313	F086976	AGGAG	MSGDKIPDLDSNGKFVTPVSGNKVYNTRQEVVEARISKEISTERFYELLGVYMEAHEEAPEYGFVGVGCISFAEAMLQDHQGAVVEPIRIPTLYTDEDFNKENKE
Ga0209092_1000655317	F006939	GGAGG	MTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGTEV
Ga0209092_1000655319	F059965	AGGAG	MSLPPSMEMELMNLGLIRSDLEELGSIARQTGFHETRAEIKAWHDTLILDGKVMF
Ga0209092_1000655322	F030435	AGGA	MMDNQEILDMCRRLASKYYNHQDYDDIVSEGVVLCLNMRAEGITEPHKMYYRARDEMSNYLNVRSSNLSYPKSRAGREAVKDDNTEYVDAEDEQIPAEDLFGSYELKNSIEALKKHLSKREWEVFVCLHNNNNNLTHT
Ga0209092_100065534	F001153	N/A	MLSLQKEFIMAIPAKKYSEVIAKKVVAGIKNGVAVRDILGSIQKYQDAPSSTATFYKLYGNLIAETKADIVGEIGNVVVNAARGGDFKAAEFFLRSKGGWSPNSTVNEVEQDVDPDLDESAIDSLMLLLGKNNPDEETE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209092_10006553

Overview

Ecosystem & Geography

Associated Families

Sequences