Scaffold Ga0209092_10006550

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10006550
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9198
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F023957	Metagenome / Metatranscriptome	208	Y
F033111	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000655013	F022909	GGA	MDDKTNKEILRTFFDGKIGCIEYSEKWRPQLEEFCSIAKDLGYINNESPEAMKIDEIQYHCMIHIPTNKIYAVAGVQYMPEYKEGYYRIWTRLCRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWKQSNCNATFGTTLANKAYADNYVRSANTITDYVARNWWKKKGIALPEGMTEFYGVPQVVWNMQFEKFKELS
Ga0209092_100065506	F023957	AGGAG	MSNKTPYEIRLELIQEARLILQAQAGKAENMPSTEEVITEAEKLNSFISRKPQQ
Ga0209092_100065507	F033111	GGA	MRNELPYYFEVPEMPEIPFDVSQYYIPDEDRLVAQEDKKNLDDIQGTKNRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKRIKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVFGNADVMEGQWATFPRFKGVPARENEKMGFVTKKDMENTEILCKWDKPTVPAFYNTMIFHRGFNEHSDIDRVVLSCAVEDFSDINVVHRKYTSGKLFK