Scaffold Ga0209092_10005938

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10005938
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9784
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038091	Metagenome	166	N
F050682	Metagenome / Metatranscriptome	145	N
F101904	Metagenome	102	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000593813	F050682	AGGA	MQNTNYQNVVIATMQNLAALVSNAAHDSIVEKNDYSITDNVQALQYVFANYTQHTSAASLAAAALNSNLDTAVRENIHAQLTFIN
Ga0209092_1000593814	F103560	AGG	MLKNKFAFTVINYNTLLIVNSNTQQQRYAHNVTLPSLYAVTQAQLAKLYKTASAN
Ga0209092_1000593815	F038091	N/A	MQNITSTNTLIVTNPIMSPLFIAQLITAASYNKLSAQTKADISVVAYSAAAYKKAMRTSVTAQANANVVYNVTKNLSYSIAV
Ga0209092_1000593816	F101904	N/A	MRNLQVHYTYKTQNAVVADLCIVQSKTTRFTKTQQLNTQLKLAKQLNLKHFYAVTLTHYSVC