Scaffold Ga0209092_10003867

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10003867
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12766
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017912	Metagenome / Metatranscriptome	238	Y
F022760	Metagenome / Metatranscriptome	213	Y
F056914	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000386717	F017912	AGG	MWINWKHLEQAKQKAGKPSAGYWWHFKLAISEFFFLLLVTLGSLIHAIFPWVLDFQLLQWRINRLKMLKDKLPEDEQLKKVHFDE
Ga0209092_1000386718	F022760	N/A	MLKQFCKECKILGYENNSSLERMNLLWCKDVGQYWCAVKDDKIVAVAGCHPFPEAGENAWRIMYRGCELPGNDTFRGLGKGDWNSITQREFIPLMIKWIPSKDLYITTNINNEHSNGKVARNHRLMGLLAKQKILDKAQDMCYNGVEQTIWKLNIEIYTSRRERIIGRYVD
Ga0209092_100038679	F056914	AGG	MKLFTQTIANQIPVGLDRYDQIFAAKELILASDSPLLSTCRETLEEIEEIIFQREIKSSFKGN