Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10003720 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13012 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (35.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003188 | Metagenome / Metatranscriptome | 502 | Y |
F035837 | Metagenome / Metatranscriptome | 171 | Y |
F051049 | Metagenome / Metatranscriptome | 144 | Y |
F059880 | Metagenome / Metatranscriptome | 133 | Y |
F083269 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1000372013 | F059880 | GAGG | MKKLHFENTDEFERVFKTKDEEVTDAMVEGIQEAFSFQKKSAQLFEITFKDADIVYDISLPSTQWEIALETCLEHYREMDLADKAIDTYLLQKGIRLWLS |
Ga0209092_1000372018 | F035837 | N/A | MKQVKDLKVGSIFQMEGLDMDGKTVQADCTLRAYNGMNKYIVESDGISLLVDGEDKVTKTYKQ |
Ga0209092_1000372025 | F083269 | AGGAGG | MSIKKVSVTKTSTYTVEGEGKVTRERIVELSHDWTEKDIILFKKIAKQGGICRVKGNKYTVVPGEKITTSHGWADAGVGKMPGPE |
Ga0209092_100037204 | F003188 | N/A | MKSIKNYIRVVLKSRLDVSYRIKTKEPDREVMNKKIFVEVLDQLRAIEDRKDFLADEIGMDMTQYEDQFFAVIENLFKLAFNKSQLALIQMYLYKLIPDKDWDGMITIEENKLEKDVPFQSPDEVWNVIKKFEK |
Ga0209092_100037209 | F051049 | N/A | MTVLQSLNNLEVNYIKHMEKYNGYRDAGYVWWERIKDCQKWCNKEKTFVTMSDTQTLMVMRKWVKKQKSFDIV |
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