Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10002755 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15827 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (13.95%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030770 | Metagenome / Metatranscriptome | 184 | Y |
F032285 | Metagenome / Metatranscriptome | 180 | Y |
F045129 | Metagenome / Metatranscriptome | 153 | Y |
F049660 | Metagenome / Metatranscriptome | 146 | Y |
F061854 | Metagenome / Metatranscriptome | 131 | Y |
F095485 | Metagenome / Metatranscriptome | 105 | Y |
F103295 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1000275523 | F032285 | N/A | MKWDNVHISDKIHWLKDVVMNSTNYKEGDEFIINALITGSNNTFSGEMGFDIQPHHMKFMRELWNEHIETQMDNSIITKLREKS |
Ga0209092_100027553 | F045129 | N/A | MSIHYIDEPHRQRVIDILSTDDSDDTKQSKLKLYLISEPYFKHFASEPSWLTREIIKDFN |
Ga0209092_1000275538 | F061854 | N/A | MFKKVKSKMLTYLFTDWVKNEEDVETLLLTKQLIENRKNAIVGHTPIIGFRTNHKVDGSL |
Ga0209092_100027554 | F095485 | N/A | MKASDLFRELGMGDDEMGEARNWVNYKHFSETIPIVLTLSEYVDTVYKHAVTVDAKPHQWFSERYMTERYLQSDVGIDSDYITNLENRICKILRNGKIYELHIEKFLELCLGVVKKSLLALPKEVLIFLNQIYKGKY |
Ga0209092_1000275541 | F030770 | N/A | MLNTEKPKVTKPWSKEMYDWNDSVSDLMKAEIKIQIETNKNDFDKLNELVTLCGGIKFGDGFEIEDVYTECLRELENVQNYWLNEEWAWSVEQGIVTDCIKIYFVGY |
Ga0209092_100027555 | F049660 | N/A | MKAYSGKPRGRVNQGGATHQKDRDRLKEFGKNYNSIDFEMGEHLTEGNYKDKSRPIGTLVVGNQRVDLTWSECNKIFTTLLDAQQVHRRKIQLGMFD |
Ga0209092_100027556 | F103295 | N/A | MEIDKAKFKRLKKKVLTKYPKASTQRTSDGKYFVSDGVGNELMKEYMIPAQSTVTAAWFFLADVMKIHQNIERTHPKRMDLKSFEAKFARISKRNRK |
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