Scaffold Ga0209092_10002638

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10002638
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16354
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018178	Metagenome / Metatranscriptome	236	Y
F097396	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000263815	F097396	GAGG	MNLPERELNHPEWYARDLGACSQCSEPMLQVEDEGHHIIACRVCDLGGVADNDRTFKVKFYGIDDGEDLHSFQNGIIADSRTEMLELIEWWGENFHWEIKQQQHDGKENIFGILVEGNVLESNPSRQYFIYHQSQEIGCIVEVL
Ga0209092_1000263817	F018178	GGA	MNDRMDRILERLSERINEWEGASVEAIENETKLKSWEAVTKKAHMDSGESAARAEVETRAGGQWAEYYRAVQLSSLNVEKLKKQIMLGQLAFDAERTKQANLRRVV