NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10002144

Scaffold Ga0209092_10002144


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10002144 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18408
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040106Metagenome / Metatranscriptome162N
F042905Metagenome / Metatranscriptome157N
F042906Metagenome / Metatranscriptome157Y
F080057Metagenome / Metatranscriptome115N
F088304Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000214410F080057AGGAMLNNDWKDIVSGGGIGEEFTSIDSMKQYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSIALFHELAYELKDRNDVVLDDIVIGPTDFYGAENLIDIINNPRLADAILMMPEDNRNIQHNCSILGSLSEKDIQGKIKAIEESPLGKVVEAWDVQIALDLNRLMNDPEYLNALDERIETFKNSSLNFEISMATNIVQGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSRLAVDPHRFKNKFHFLQGDVSHKAFHYSVVSIYHGDMYLSPFIYENAQIHTDDFKVDDSWHWLPDANISDYILKKKDEVVVSQMEKSGDKECGSCKYLNICVNRMVPMIMDTVFDGRKECILNKDVIALFDDEVYHGNSY
Ga0209092_1000214411F088304GAGGMGIVTNNRRAAQADKDFNLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNNNGYRVSTINIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISTDRDDSNQHYNSTDVIQLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLSLLNGFTDDLNYYMVYNMGNDDVQF
Ga0209092_100021445F040106N/AMLVAIVAVIHQEEDVKMTMQKSYCKQMRYSGPESLSPDSASKFDVLIQMEVLVGCDHGCLGCFVDKNIDPDMNQQIIDRAKELADGVARTGLNLREFVIGPTDFFTAKNTESVLNNSVVQEIMREHTGARIAAPAKFDIATMDKVKEIFAVLDDEDKYRRDMIIEFIMPIGRVEQMLNDDEYFDNVMEKVEFFKNNTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCNGCQFAVACASRLIFEAQETLNVDGCVLNKDVLAEYNPYDWTWNDDAMEKLGVTS
Ga0209092_100021448F042905N/AMIVHLNSTYAGYYSYNADESPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIGGSYHPDEITIGPTDIFDAENFSEIMSHPYMEKIYGISAIGFTSTLTQPYLLVKEKLAVIWGLYKHIHRVPDIDFKIVLDIDKYLDGDLDSFYKNLELFEFGSVQFRVNYHKDVFKRIGYNELCQRVFDDFNAPVIITPSFLTDRNVRGKVTQHLENFRREMLEQKIDKKWLNLYTFFDAKFNGFGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEFMMSCAERNVHLYMESRGLDSCVALKEYMYASD
Ga0209092_100021449F042906AGGAGMPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDPHQLEEAKQFIKTITDQGILVDEMLIGPTDFLASENFYEVMPHLLDVINENSPILAFVSTLIDGDIKKFCQFITDNINLDTEIEIGIATNPHKFFNEDYIQHVSEILDYIDKNLQHEVTYTFVVNIKDYGLDYEELHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHGGMNYTVLNYKKGEWYLSPFMYENMAIYHDMFKVDNFNSVNGMVEQQIESAKGTECENCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK

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