Scaffold Ga0209092_10001929

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10001929
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19601
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (92.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024092	Metagenome / Metatranscriptome	207	Y
F026849	Metagenome / Metatranscriptome	196	Y
F038091	Metagenome	166	N
F101904	Metagenome	102	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000192922	F103560	AGG	MQKFGHTVINYNTLLIVNCTTQQQRYAYNVTLPSLYTVTQAQLAKLFKTAT
Ga0209092_1000192923	F101904	AGG	MQNLQVHYTYKTKNAVVADLCIVQSKTKRFTKTQQLNTQLKLAKLLNLKHFYAVTLTHYSVC
Ga0209092_1000192925	F038091	AGG	MQNITSTNTLIVTNPIMSPLFTAQLITVASYNKLSAQTQADISVVAYNKQAYTTAMSQSYNAQANVNVVYNVTKNLSYNIA
Ga0209092_1000192933	F026849	GGAGG	MQTTKTQLTQHSYFTNCAEVSDENFNLLTQQQQTQFTQAEKAFVLQFVADTLQSLTTINVECREEEEYFVRLTDSLEVLANLQMLYSTLCNETATYTFTLEQAARAICCYDTEYRECICEQFEDACNEAGYNTLALRIICNY
Ga0209092_1000192948	F024092	AGGGGG	MGPFNEQRQLERRAAVLRILQRDNLSAWGRNYWGTVFDTIALTEDRYNDRVVALYKNLSTTSERLVK