Scaffold Ga0209092_10000943

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000943
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29477
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007974	Metagenome / Metatranscriptome	341	Y
F022459	Metagenome / Metatranscriptome	214	Y
F064686	Metagenome / Metatranscriptome	128	Y
F102835	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000094314	F064686	N/A	MDNKNNTKTMKNKITYEEYDMMWFDLREGKISEEEWRAFCDELFQQELERNKDVMVRLKN
Ga0209092_1000094334	F007974	N/A	MSKRAKPGVDLRAPNPTKTKRLGRSRGSLVFNEHVGHKVTQKIDEAITNRLQG
Ga0209092_1000094339	F102835	N/A	MKVKIKAELDDEAFKTGDFIQELGKIQEEYLDKLMAKVVKEKWIEGMTKVEINDWLFDYCFNGWDNDKDGFENTFSERLDKCSKYEVDEGE
Ga0209092_1000094344	F022459	AGTAGG	MNEYKEKQNAWQEATDNWVKLTLEKYDGYDIDDLTQVFMRGPFAGWSERMVVELAMGMDDANKKVPRHV