Scaffold Ga0209092_10000810

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000810
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31544
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (94.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F063086	Metagenome / Metatranscriptome	130	Y
F064107	Metagenome / Metatranscriptome	129	Y
F069452	Metagenome / Metatranscriptome	124	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000081023	F063086	GGAGG	MINLSVDTRNLSHSLSEEFLEEIFSEMAFLVESSFEVSVEEIHGAISFWTPTPDDEIEELELFGIIDIGDETTAFQKIVHLTHEVGHVVYHMDELFKGTDDVMFTESLAWYLGYHFMADHGYKIDMVTYEDEMKYALKLYRWSENDTDVE
Ga0209092_1000081046	F064107	GGAG	MSNQIKLTFDISDELLDKLLTVMAITSQQNALQGAMPMLMGAMGGATPPPPPKGDEKPSMGFDMGKK
Ga0209092_1000081049	F095340	GGAG	MIRTGDLVKIDQEQGKIDIGIVLDYRHTGRFYPSIELTIKLSCGRTIRKDYKTVEKLGENNDQETTEEKK
Ga0209092_100008105	F069452	N/A	MFDVGDLVRFKPSGVSRSRYNPNKTIGIVVRIERNMFDSYDGSKEDLIVVRWMPWDKEERMMEFYLEHLEKE
Ga0209092_1000081059	F055213	AGGA	MGMGTDKLGEIMSHYGNQTPQVGDLYVSTTQGRIHILVAYEFHHMDRIDFSKYYRAKLKRLDDGAITSWTKPQHEFYRKYKPLQPDPQA
Ga0209092_1000081066	F025385	AGGAG	MSYFNKSTDDQVIKSFMNQETNKSRTLRTDGQSLWSFDTRIAEHIADGQGQGATIVYDYTYGGGHYVSQTTSNHVRLTKKEVPRPNWMNVDEAKEHGLCPLVESRHDASRQS
Ga0209092_1000081067	F035970	GAGG	MDKWNIIMKTAKELATEYRKEGWSGDCNDFTQASSSVSQELTNREMETLWDEFNNQELLTDGMVFTFTRQGRDKIITVKNCP