Scaffold Ga0209092_10000715

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000715
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33140
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (31.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022459	Metagenome / Metatranscriptome	214	Y
F030099	Metagenome	186	N
F033809	Metagenome / Metatranscriptome	176	N
F042800	Metagenome	157	Y
F049642	Metagenome / Metatranscriptome	146	N
F062252	Metagenome / Metatranscriptome	131	N
F068853	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000071515	F033809	GGAGG	MSEELQIETNNFVARKLKDAQAATDHGRAWCKRQPKKWALVAQHIIQKPDEVSTFMRKNNITRNFYYDVQTELMADPESSEIRNAWAAEISSVMFQGLDTYRQAQDQYSSRVENGEIQMDGNELFKQGKSLQAFSDIHSKLTGNNIQRVVVEHKTTLDEAEEYARKMLEGIQEVEIVD
Ga0209092_1000071517	F022459	AGGAGG	MDIHKEAQDKWQLATDHWIELTLEKYKGYDPDDLTQVFMRGPFAGWSERMVLELAMNMDDANIKVPRHKIK
Ga0209092_1000071518	F030099	N/A	MTESEHETCKSLAEQLGKPYTAMSIGKLRAAVCSEEDLQGKYILPTGVLKITAQIKGEIDVIEAATPAIVTVRVLHHQTGNPRFVFAEDPDTRRKVRVSVPKRHKDIINHVGKRLKVNKVDQDGTAYYRYPAI
Ga0209092_100007152	F042800	N/A	MNQTKIHLYKNTPFGIERVNEKALTVTEARALIRSNPNLTARDAESASYEVLHMPIDWQDEEPTRQELAIASNLSLGLKIAACISVALFIAQKLLP
Ga0209092_1000071531	F049642	N/A	MKVIVVISGFTQKNHQNTGSKQLWRELRLLDDLCEGQDSMIQLKEWNSDWKAYAKYINSLKPTEVLICCYSWGGGYGMPQLSKRLECDVSVVACDPVYHSPTILGRWWALFDRKIKLDKNVKVVGWLSQRGDYLDGDELVGGKSICRERTFNYDHTSIDNSPEYHQIAVLAAKTYLQT
Ga0209092_100007154	F068853	N/A	LLSRRIFHLQALPLMSLQKYNKSQLAILRAVKDDLKHHLGKEINHDPEGDAEALTELETRLADWLTVGGGGAWLRSLPEVDKNLTK
Ga0209092_100007155	F062252	N/A	MNELIKIILNTRDFCGNEREAISDWESENGKLSAHQMANVALEVNQEWKLSQLSANVKHALTDTERLQAFADIESGI