Scaffold Ga0209092_10000685

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000685
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33919
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (94.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F027520	Metagenome	194	Y
F034138	Metagenome	175	Y
F053660	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000068538	F053660	AGGAG	MRARKYEMKETPMGAGRDHPNTKFIKWIGDRTDLGLVKGESYTLHELGAAVGIVASSMRGRIRGANEVSDCHMWANGERKPKEEWGITTIVRCESKADKISQKYLRMKI
Ga0209092_1000068539	F022391	GAGG	MTQGDYVKISSTTEVDAKIRHLEARIRGWNYQSPLTVKLAPFTDPTSLSQDALFNIWCREIADQMKKKAPDADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKAKMATFMHSVLVYADDKLRVRLSVPRNSEYVRVRQNELEKESKQKAKEEANDTTGSGKGSSPTAKTGSPKSEQQLGLL
Ga0209092_1000068544	F027520	GAGG	VNSALRNQILAERKRERRLDIAASVIGWTVTIAGAFIGAALFYTVTFTFLSIGA
Ga0209092_1000068545	F034138	AGGTGG	MQAIVEFRKSVYGPVLAEYNVAGRGHNHIQEKCALWGQMQEYGYWSIVYNLTSATYDKLMTVNGWPTVRGVK