Scaffold Ga0209092

Basic Information
Taxon OID	3300027833 Open in IMG/M
Scaffold ID	Ga0209092_10000236 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027833 Open in IMG/M

Scaffold ID

Ga0209092_10000236 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52786
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (12.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

52786

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (12.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F014036	Metagenome / Metatranscriptome	266	Y
F026041	Metagenome / Metatranscriptome	199	Y
F038691	Metagenome / Metatranscriptome	165	Y
F059026	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000023634	F038691	AGTAG	MGFHKRYIDNEQVVRLYEGGGIVRIRDWYTRGVDALITETGLASQVGSILSDDDWRQFGTVRQDEEIIKIIQQHLGVNEIKK
Ga0209092_1000023635	F059026	N/A	MEHIKDYKLFKESLDIELITERFSSDILRQFAAQDGGSRWRDGVAKDMQKFASLALDQISDADFTTTSPEAYWKGGDAKNPNKVGFFVDDDPGFIKWAKANKKYMPGNLSLGNISKYGVVLSVIRGGIGMYHGFSMDRGRTYSRHRKGTEERYGLLAKEYETRSMYNGWDGAPAPKVTRKNLIDAATRVYVLDLDSLRDKYDVSGLKSDRAISKMGAVALKSAKDIREENRKRYNAILTDKAAMTDIDKAVKDSIELLNSHIRTALAAGTMDKFGNLVIGEDPRGRSLKITDGADYMKRLLDDYQRYKDYERQDKEARAEGRGDNYYAREVKNYAKQLQDRAKAVKAKNYAW
Ga0209092_1000023652	F026041	N/A	MIEIVKEKPIKSSTSVEGILVQVTGGQWYGITLFRPARNPWMGRCGKSTTTGRMDFSPDAELFQTRFGTKPENYDGLKTMLIGVLNGAEPIKHKINYK
Ga0209092_1000023653	F014036	GGA	MEMFACLFIIGLSFVFHCVVWEDDYVKKWYWKVLIGGGILALTFAAIMGY
Ga0209092_1000023657	F008563	N/A	MAKIKLESHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVTNPYANQKSDTYTITGSRGDKYTVTNRNGKFSCDCPAGKFRGSCKHSTQVQKELSLVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209092_10000236

Overview

Ecosystem & Geography

Associated Families

Sequences