Scaffold Ga0209092_10000216

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000216
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54876
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (21.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F081877	Metagenome / Metatranscriptome	114	N
F086290	Metagenome / Metatranscriptome	111	N
F099229	Metagenome / Metatranscriptome	103	N
F101085	Metagenome / Metatranscriptome	102	N
F106091	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_10000216107	F101085	GAG	MSGSFTQHNNDEKPQGSSMVNIINRLLGKIFLKKPVFFGVDEHKITLIVSPSMKIYGVYTSPKRLLSKFPFEEKKFLNIRDLKLWAEDNEFKITFSAETPKLRRELLILLGDVMVESKGDKEKELSIVVMQELKKSKLPESIKEWAKENPEKFIKNIRHVQNILKK
Ga0209092_1000021615	F106091	N/A	MMDSNQITPEMVYKFIDGLYKDTYPGFIRDYRVEVMESGFKYPIRTVTIHVLMDDEVYGNTGEGYLAVQDMEDKLKGVLKYLPYPSNVEITRYISDSHGGLKRWEDKTKNL
Ga0209092_1000021630	F086290	N/A	MISLYDKLIDSLSGYAVPYEDHPQLSTRDFEYDHPLTGIENDPIVNIDNLSFNIDTIEDLSFDEIVKIYDELVIASALTLIREYDEDDRTELFTYYKGRKNQYIDKKIPRTSAIYLRNLKNHVHSVLFKIKAKQKEERATELLPTLEKFLEIHKKSNPALYPDWLKLNFKEIRWGDLYIQPIINLEKLLESGDNIIKAKNTRDFVSKTWNRLVNANSRNYTERQKSVSVKTTYVLFEDFDSYVKNVVNKKIKPEIKNLPRGKECVHSIIFRYRKKLEDIEVQIHPRYKSECTQGWNRLDTYYFEQEIEDILSNYGWVKGVNYETSTYRD
Ga0209092_1000021638	F080617	AGGA	MEDNKLKWSLEKLLNTVGRNLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTAIVRAKETLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAVQLVGPEWKSGENTYRTLQSFEDKWGRSLDRDANDFQASPNSWIELSNGSVVDKITGDSFPLMSNGLIDKTEVWNIARVDDDEWWDSLTDEDKRNLTNNFS
Ga0209092_1000021639	F099229	N/A	MDKDIDKIVEIGKVLLNTPTLRSIYKDKFEINSIDFEFVEKTSNSQFTAQYEHYIFKVTLYTDISLNFDKGIRSGEIEGYDEIENEIWEYGIDPFYLADVIIPEQILNIILPKGKNGPKVAIELSIIGDEGQVIWNDHMFGRPASSQFH
Ga0209092_1000021640	F066233	N/A	MELENNLDGELKVEAQEKGKMAVKVLDALVFSKFGGIEYSMMIRKTRANSYSNPTAYPFYFEFDIDIDVDKTFEPSPTYDKKYEEYIYEIGDHIGRALRYVNLQDYMDEPMFTYVNDELVDNEVDRLENKLILYLQSQYEGLSYNSIREADIGYYFYKGETDNPYMRVEYVGQPPLRDGDRQSTDTIEEREYFSCDDLYDIMSDLFDRSPLSLSYDGENFTCQ
Ga0209092_1000021645	F061838	GGA	MSDMFNKVMPKSYDDFAKYSNMVMDHNVLDGKIKSIELDFEPSKEPIKYGDYEMIQPGTLVIDVILNTEGFYEISDSMPELKNVYKLRPELEADSFLEFNGYEFIKNIIFPYISQKFLRLMGLSLGDVPYVDFNLINHRGETILNYDEDLDTFIGSENSSVWRKIS
Ga0209092_1000021646	F068848	N/A	MVMSIDTQYGMLFKFMNQSRSNYMGLDLTYNFELLPENRISVDIFAEGKFDLPIRTKQMFRNMFMEFFVKDSKYFNIPRSSVGLLDFNNISLNGERLGDRITMDDNFKKDLVDVESKLKKYYSIDIADNPHGSFKLEAFDNDLKTYIEILDEDSLMYTVDIKESQKITLNGNEFNKDTIIDFLDSVDLGEDNSFTSPTKSQPVRKMDPDLIFESISNAVWENSVEGDGTSLELFWDKLMSNGMNYQNHFMENMGMLSVVNLNSYDGMFNDNMHNYNTESQSEVLSIFVGWLETNKGKYKL
Ga0209092_1000021692	F081877	N/A	MNTKKDMEFKSEEEFRGVAKRAVQILLYVVESKSPLLRKLRAKNFISNIYGANQNGTVYFEVEVPFTVTDPDHGPLCQELDKVLSAVINAFGDYHLNENMEFVTKTEEGDDMVGFLNSCSFDWTNHEDEYNAKANYGFEYNWSSMG