Scaffold Ga0209092_10000201

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000201
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56816
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (18.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004370	Metagenome / Metatranscriptome	441	Y
F004479	Metagenome / Metatranscriptome	436	Y
F012239	Metagenome	282	Y
F021804	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000020125	F012239	GAG	MLIDKQFELEIPTHIAFTLYKNDYVDNLIISKVKKECINESDKDSEFIVSLDQFQNAIKTSTFLRGEMKKVIDQDLLPNPNFKPNSIFFLQAIINRLVNLETITFKISNEKIFSRLVKVGDGREIVSFHFNIIEGTFDLTKILNREQLDIFNKRFMDVGIMKNKYLERTSYFYIKAVTLFDILAEMEEAQILDAFDIITAVDPKIEEDDPILLVKTDYTPY
Ga0209092_1000020131	F004370	N/A	MYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLDSDTQAFEVIFKVEDMNDHEKNVNKVIWNPFRETFTTLKQIEKDADLVEWNCGICKVPIKSRMDSKKVENFVCSKCSKAHNSRNRSVDGRIIDTSIKFTKHCKHLLKREQKEFMTYAKRSSKA
Ga0209092_1000020145	F021804	AGAAG	MLPKTLNTAKLKVKYVLGNHTTLPSYPDAEDVIFELIRDYCGKVAKEIKFTDISMAKRWDLSKEQCNTILTTLLKHKLVNISLQNSAYTTYEVIYNPYE
Ga0209092_1000020148	F002407	N/A	MEATIKKIDGYELSTFVKKLLPIDKFIFMKIGKQGTVSSVYFPERDAVKLVSTPTSDIFDTDIDSSVKVSFYNGTKVIDALSHFNGDIQGKIKYTEIDGELMASDFTIENDDLKINLACADPSLSFMEMSKEETDRAFSTDGSIFQFDLLTTHVDKMKSLFNLERDEDTFTLAITDKGVAVQGPSYDATLAHSYEGDDVVGQKVVIYKKYINLLDKENYKVIVCSNKVVFKSLDTNTHLTVAVAITDED
Ga0209092_1000020153	F004479	GGA	MHNSKILVGNSGDKVFLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDIKPLSETSYEMKRYSTWYDKILTQPLNTSLGQLENLISIIGKFDNVGSDVKTQDYFDKLQLRTGYTYEGKFDATSSWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFAMEYESHIYNNHNKKYSSFCKGAEKIMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHELFDELEIKYTK