Scaffold Ga0209092_10000198

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000198
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57330
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (73.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040079	Metagenome / Metatranscriptome	162	Y
F048753	Metagenome / Metatranscriptome	147	N
F048918	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000019846	F040079	AGGA	MFEVGMGFIRNYAKNTATGEITSIHDNADGVTLVTVSFDDGSMKSYTEDCVIANLGKRIIVTVGVI
Ga0209092_1000019895	F048918	GAGG	MSSIHYLKRSHNEAIIKVYVTDSSGDTVDIAIADLIAAGETFDAGTASVTIKEIHWGCKVNKHVDVSRWDGVAPHGHYYFVNSGSLEFTGFVDNVYANRDIRIVGDGPFHCIMKLTKETGYTS
Ga0209092_1000019899	F048753	N/A	MVGEQHVEISAQVVQKLGFYMFVVMTSLLLICTAFGFYAVIQKFNEPNWKEVCIAKGGVPVQLEKSV