Scaffold Ga0209092_10000186

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000186
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58612
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (84.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039349	Metagenome / Metatranscriptome	164	Y
F043827	Metagenome / Metatranscriptome	155	N
F048753	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000018615	F048753	N/A	MVGDQHIEISAQVVQKLGFYMFVVMTSLLLICTAFGFYAVIQKFNEPNWKEVCIAKGGVPVQLEKSVFDCKKM
Ga0209092_1000018619	F039349	GGAGG	MAILTKTEGYFIINDGAISLSESNVVSYRDDATVQEFDTEALMLAAHKEQFPDQYPDLDDPDE
Ga0209092_1000018676	F043827	GAG	MDRITMKKKAALGYFDTNANDDVWRKIGSFSKLAVWVDDSDEGYLDVEVVDNSVSHKRSPQRVKRVLRVQLSVGSFKNAFHIDMTQLDHRYGGRGIAAKAYRYIIKKLGLTIQAGTAQSKGGRKVWFDLAQINDLNVYVQSKYSKKYVVGIDTEEREVWHPMKEIYDGEKEMYVFATAA