Scaffold Ga0209092_10000178

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000178
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59680
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (74.03%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019852	Metagenome / Metatranscriptome	227	Y
F029485	Metagenome / Metatranscriptome	188	Y
F033111	Metagenome / Metatranscriptome	178	N
F034245	Metagenome / Metatranscriptome	175	N
F067759	Metagenome / Metatranscriptome	125	Y
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000017811	F029485	GGAG	MDSYWEWNKENFPWHYDPSSKHTDVQYVGQFIHDDMDKYVNEAIGNFTDEDDYNEVSIKGEPYNDEAREIMEGYHNDLTRAGFNEHNTGGRQTRNLPAFFNLMADASGLWNPQIMMLEQPPGRFVPWHRDSYNNYRRNFAKVSDDTEVIRYLVQLNDWQWGHYVSVGNDVIHQYKMGDIHCWPEGIYHATGNAGLWPRYCLTITGVVTPSALHLKEAKEFKI
Ga0209092_100001782	F019852	GGAG	MPTKFSPSHTTFVKGKGKVTTHSYIKNTPKEELIKYLNDGQKPKIKQKCSNELARRGIDIVWKTPAED
Ga0209092_1000017826	F033111	GGAG	MSDRKDIPYYFEIPELNMPSFDVKQYFISEEERTIARTDTKTADRLTGNSRSNTANWYQSFIKVEENSSQDKRDFNQVNLYEEANFDLTRLLKEWLHDHINLRFTSVLMLRTPAHTNSRWHCEGPVFHTRQCALNFPVSGDFTKSEAQWATFPRFKDIDPRENEKHGFVTQTDMKDTEMLCRWDNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVYKKYTAGNLFK
Ga0209092_1000017835	F034245	AGGAG	MRGITFSEFSGGQNVDMFLHAPETMPGTPMQEAIKTAVTIREKYTKDIYVWCDYSVQHMYSQLAMQAFKMAGIDFKAAIPILSNNLSKRENECTIAYCESRNIPYELFYIDVPALFDGPDFLYWGEHFPTTQPQMTIVGQFFDLLPDCCLVYPGFMMHVSNSEWTRSKNNGFMPFVPHATQEHAAAHAGLEYTNFQEHYVNMYSSWFFTQSYSEVFKMATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSFFGHDKYDKELRQKLMPYGPLTMKYASLQYTVKVDTKLKDMLETYYETNFEFLNKLF
Ga0209092_1000017836	F089156	N/A	MVLFQFEQSIITDNLPVDVIKVLHHNTYLLDVQLNEYDLINQITSNFNVVSMQSNNDCAYIDVYERLTASYTVLQAEDKLVHLIEKLDLLAITEPQIICISWQMDRNYIVDFRINELLKVGHKVVCAGGNQDLPVLDISPVAVDGVIRVGGNKHNGKYQNWIDLYDITVPDINCSNEAVHRVCEILTNKELELEYKLDFYSESHIRSAPWPLRLAQTPSSNHKVYEFNPVSNLRYIAGEHLLPSRPGDTVSVLSGSTPLEDFAGADNIELSTELPRGITFDPNVGWLYGTFKYKKAMFHKILADINGQLFEYHIISCDADSKPSYEEVKHTYFNRPYDAPPFTLREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRSYE
Ga0209092_1000017854	F067759	AGGA	MEERNQPKPVEQEVYAEKGNLEAHIIADMLRIESITTELREFKDDTKQRLNKLENWLVAIVGTSFTTLIAVVIGLLVNVFGK