Scaffold Ga0209092_10000136

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000136
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66454
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (19.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F021987	Metagenome / Metatranscriptome	216	N
F035317	Metagenome / Metatranscriptome	172	N
F051922	Metagenome / Metatranscriptome	143	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N
F104988	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000013610	F080086	N/A	MTNITAIEASIEALENECQAHDFKFMENPWRETHWSNEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY
Ga0209092_1000013613	F070126	N/A	MRLYQLYTYCREVIEKYPALRDDVMRHFALAEMECEDDCSSEEHEVELSLTDIDDLVADYEMQMGLQK
Ga0209092_1000013615	F035317	N/A	MTEMKLYMQRCEELRKQEMAERHAEATEEFGFCSGTNYKEWSAKTGMKGVSRKGKTFSHTKLWDYRG
Ga0209092_100001367	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYKFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPTDARTMFNGDANLIQPQNEVI
Ga0209092_1000013679	F021987	N/A	MNKNSTQIKDQLVRKGASEVIEEALKAGVFFSDVDEMHNWIEDNFDVNMLGHTDNEYDEVMDIMMEEVHDRVYEFFNQVQVGILEKAFMVQKSLAHDTDL
Ga0209092_100001368	F014147	N/A	MTTIKNTFERQLHEKFGVNIMSTMGTDSAILADGTHGTDYISYHDTSPDWVFGVHPALQAFIDAHGWECEWQNSEVLNLYPGHDWTSDFSEEQLVSHWNAMCDYITAPQDHIYLNNDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSGLTLDSHGDPTSFDSLLNYLDVPELEEYLIAHALI
Ga0209092_100001369	F104988	N/A	MTPKEIIENRIGRMFHEVIDPDFAFIDECETIADYIEEHLYDTLLWQLPIEDEDIYQRTEDIDNYNEVHATAMNQVIAILASRLFYKTNTNSER