NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10000125

Scaffold Ga0209092_10000125


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10000125 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69372
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (82.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007589Metagenome / Metatranscriptome348Y
F035836Metagenome / Metatranscriptome171Y
F104567Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000012534F007589AGGMYGFKEYITEAKIKWKKVPDGYHGNKKVFKHVTSDGKFEIRLSGMDSMKMNKDGSQKVLPTIFDKSGHTPRHPVEASRNVADAKKNVQIWRDNHGI
Ga0209092_1000012551F035836GGAGMKKDRFDLEAAIMEAWQTAEDISLIYHNTDNLDLTPRDCDAIQNQLLGLKSIADLRFQKLWDTFESLVSDGCTCIHCDCSDDTPSSKPIYES
Ga0209092_1000012589F104567GGAGGMYQQQLDLQFPLTQQLGLDLDVPVDQRLNFYVNNDLITTIDGNFNSVGTISSYLTVNNSKGDEAARIDDTGISLRMENQTWLKTKVANWLGVKYL

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