Scaffold Ga0209092_10000086

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000086
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78135
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (89.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F013640	Metagenome / Metatranscriptome	269	Y
F048351	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000008620	F013640	AGG	MAAVDEILLAPESFRTIYLRREDRVIMRTELGQKIIIKRIIPAEWEPYRIYEYEETLNNNKKEIYLFDKDFLPQITKEFFNSVSE
Ga0209092_1000008631	F048351	AGGA	MSNVKRDSTSGAIVNTDVSALNKYKVERNYYRKVDKLQDDILEIKRSIISIYERIEKLEN
Ga0209092_1000008634	F004712	AGGA	MPITTITTSQAPDAKPVAINTIVSTNWQVLVTVPQYEVPELVFGGSTTVEPGVGEIISPLIFCNTTANTATIDVRFHREDVNQEFYVIRNMPVPGYETTAIPLNGQFLKSGDTLEVLGNTDLAIHATLSFTLGQSEEDDVV