NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10000058

Scaffold Ga0209092_10000058


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10000058 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88598
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (8.20%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y
F055007Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000005822F055007N/AMSNCAHCNKRFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK
Ga0209092_100000583F005243N/AMMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA
Ga0209092_100000585F004866GAGMAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS
Ga0209092_100000586F006666N/AVNPKSHKDLRKGIADEVGVHPTVVDDFISFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAQSEDIHKNIVEMESAMKQLEKDIKIKKKFKNER

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