Scaffold Ga0209092_10000028

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000028
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115064
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (78.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023453	Metagenome / Metatranscriptome	210	Y
F037425	Metagenome / Metatranscriptome	168	Y
F056058	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_10000028135	F023453	AGAAG	MRFNEVAKPEVIYELEKWAKTQVPLLEGTMSAEKLSKTILQKAMAKFKKQPEPSEEKNQEMEDYMAQLEVMLNREEPTVEKSTLQKFFGFFRAHPRMIGLGVMILMLLSPILPQIAIIGLSLEKILSVILAGLYAIDIASPTVKTALEM
Ga0209092_10000028166	F037425	GGA	MKTSTVKPHLKWNGFREQYMGIIQNLVNNIDICNRRYAEEGDEGYLAARKKYIEEVEELKTFIVKKEKELGYYGDEQ
Ga0209092_1000002823	F056058	GAG	MSFKNLIYATVITFVIIFVFIKSVEAQPHDVVDTGPKLLELATELEDKDLAIMVLGGIDYYVQECTELTSRGVIYRNKIITYHEINEALLPINPLYIKGSIAVSGYDCYEMYELITSFENNIVEQPEHPVDKQQTITEI