Basic Information | |
---|---|
Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10000028 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 115064 |
Total Scaffold Genes | 180 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 141 (78.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023453 | Metagenome / Metatranscriptome | 210 | Y |
F037425 | Metagenome / Metatranscriptome | 168 | Y |
F056058 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209092_10000028135 | F023453 | AGAAG | MRFNEVAKPEVIYELEKWAKTQVPLLEGTMSAEKLSKTILQKAMAKFKKQPEPSEEKNQEMEDYMAQLEVMLNREEPTVEKSTLQKFFGFFRAHPRMIGLGVMILMLLSPILPQIAIIGLSLEKILSVILAGLYAIDIASPTVKTALEM |
Ga0209092_10000028166 | F037425 | GGA | MKTSTVKPHLKWNGFREQYMGIIQNLVNNIDICNRRYAEEGDEGYLAARKKYIEEVEELKTFIVKKEKELGYYGDEQ |
Ga0209092_1000002823 | F056058 | GAG | MSFKNLIYATVITFVIIFVFIKSVEAQPHDVVDTGPKLLELATELEDKDLAIMVLGGIDYYVQECTELTSRGVIYRNKIITYHEINEALLPINPLYIKGSIAVSGYDCYEMYELITSFENNIVEQPEHPVDKQQTITEI |
⦗Top⦘ |