Scaffold Ga0209092_10000014

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000014
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144012
• Total Scaffold Genes: 149
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (14.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002698	Metagenome / Metatranscriptome	536	Y
F035779	Metagenome / Metatranscriptome	171	Y
F048336	Metagenome / Metatranscriptome	148	Y
F077808	Metagenome / Metatranscriptome	117	N
F084252	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_10000014129	F048336	N/A	MFTVNIVWTWALKIKQTKTIMKHLQLFEQFVNESVSFGKKGIKAKLEDKLRLAKIAVEKWGDSYSGILNDVESTLKSGKLPSYKEPLRVQGDTAKDSYDIFQGRNAVKLAEAISKVIKKYKKYETEESSVPAAGGWSGTMRSTVGGQIQGRSNFNPGGRRTFLIAVTCGSGIDSKIKDKMFQEIYELMFVLDEYNSSDGGVMFDYSSGTNYSTIGLTNSSYSFNNGTANNLIDIMNNH
Ga0209092_10000014145	F002698	N/A	MKLKIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIHSTVYLPQRDAVKHHSIQVDKIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFDHDAIKGELEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSQDQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGKVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSETLLTISTCQTA
Ga0209092_100000142	F035779	N/A	MAKLFEEFLEEKNFQVFTGEHSIKYRLSYQYGKGGFLAMASSSKENDKEIEIDDVFKIGKAIEDSINAELKKYKQLFTVEEDHGYQGAGYAFYLNMDDLIKKLNK
Ga0209092_1000001422	F084252	N/A	MCKPAIRCSRCEETFCGGFEYRMHFDKHIDEWYESEDKAEYIKKTTHQNRYENN
Ga0209092_1000001474	F077808	N/A	MSRQFTWWRRFHGVVKLPKKYLFKGASELQQRIEFGEYEFNHLGREVYLEEKIYEAKVEAIKKESPWLNDETLIEAIDYDRKQYNKRKSIMMKNHLEIEQKLLWKLAEDLAKEFDMTKERVSDIMEIFDGNTRDLYFKCKSIALGKKFDPEKMQRFVNEQPRHILKPKERKYIMLWTKLIKEHDWKKYLNWEQLNNS