Scaffold Ga0209092

Basic Information
Taxon OID	3300027833 Open in IMG/M
Scaffold ID	Ga0209092_10000009 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027833 Open in IMG/M

Scaffold ID

Ga0209092_10000009 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	157329
Total Scaffold Genes	217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	175 (80.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

157329

Total Scaffold Genes

217 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

175 (80.65%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042906	Metagenome / Metatranscriptome	157	Y
F055746	Metagenome / Metatranscriptome	138	N
F080057	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_10000009185	F055746	AGGAG	LILATPLEEPTVSRALDYETKVFDIMKSAKIDGLDVGSVNGAGFSNQGAGDIEATYRGEQFNIEVKLDMFPQMGGTSIRIDSNEKTCTLVQPDAVDADAIPFFMKAAKVQDAPLKVWVDFIRKQEPKELHSKVPYTIPFGSVTKEAWIAAKNAGLLKEMNATRSFPDTKNIAKAYNRKNVYYIQIGGAGLFYLGKNPLRLPIPELKGAMDVEFRLGASGSKVRTVGDKTYRVVGAGYRCQGRLKSHVKSRYSLDNIKDLHELFEVKSV
Ga0209092_1000000952	F080057	AGGA	MLNNSWKDIVKHGGVGEEFTSVSSMTQYKIQVTLELLEGCSYMCPGCFVKRRGNWNPKSIKMFHDLAYELHGRTDVVLDDIVIGPTDFYGAENLEEIIHNARLSDAISMIPEGNRNIQHNCSIMGSLSEDDILGKIKAIEKSPLGKVVESWDVQIALDLVRVLDDKRYRKALRNRVMNFKESSLDFEISMATNIVEGIEDRLYEAIDYIRETYDTVIEILPSVVRSFNHSTKHGDKLFSWNDMLTNLSSDVNRFKNKFHFLQGDLSHKAFHYAVVNIHNGKLYASPFIYENAQIYKDDFEITTHTVEGILNYKHQVVTDQIINSSNKECGTCKYLNVCSNRLIPKVMDTMFEGRFECILNKDVIALFDNEDYHGNSY
Ga0209092_1000000953	F042906	N/A	MPLIKNNLYYELTTETQTKPVSAVKLQLDILDGCHHKCPGCFVHRRGNASDEHQIHKAKDFIRDITDRGILVDEILIGPTDFLASENFYEVMPSLVDIINENSPILAFVSTLIDGDLPRWVAFITNNINIDTEIEIGIATNVNKFFDEEYVQHIHKMLEYIDKNLEHEVTYTFVVNIRDYGLDYVKLHKSAIERFKTILDFVPSVSRSHKPKLILDTLDKFNDFFNELSAYKETELNNIMVDHSHGGMNYTVLNYKRGEWFISPFMYENMALYHEMFKVDNFDDVLPIVQSQLERVKGTECETCPLMMSCYNRKIILLRDYLGVDRCIAPKQNMMEHIHNYNAPAQKMYQWDDYSVENDKKGYRKRFLVTTDDDPELERIKDISYVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209092_10000009

Overview

Ecosystem & Geography

Associated Families

Sequences