NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10000001

Scaffold Ga0209092_10000001


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10000001 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)310762
Total Scaffold Genes339 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (12.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017048Metagenome / Metatranscriptome243Y
F031650Metagenome / Metatranscriptome182Y
F049219Metagenome / Metatranscriptome147Y
F070820Metagenome / Metatranscriptome122Y
F074304Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000000110F017048GAGMSSNFNYEPSKSSLRADTVVEFVNRSLLDFKMTEIPGMGPASIQKFSDHGIYTPAQIVAKFLSYVDSHDTTGLEICNSFYNWANPIMGKANTHNLTFAIANYCGEHGLFKLE
Ga0209092_1000000112F031650N/AMSDETMQPQEFEELKVAYQEAVPAIDALKHQLKSLNKEQKSRLNQIHAYMRENNIMSADIGGITIEREEKTTVSVSMKTLEEIIDNPADLEQYKRDHATTKEVLKVRKPKRRRTDDE
Ga0209092_1000000129F049219AGGMLAGESDKMLGHRLETLEKGVHVLDDRVKSLDDKVTHVIQMNSELMIQSNENFREMRGQLDAHRTELKKSIKQIKGNWSQQCYVISFAIGLTTWTIFMIWVLFA
Ga0209092_10000001322F074304N/AMQAGLAYVAGTAGKMVVTSAVSPVIGSTISLITSFRTLTHGAITLQQIIQKRDITCTLQTIEATMIALKCEKEPLKTASEHVVSCIHQIHQLLTKIADITASHNAGYISRWRQLVLDNEIEQLENLMDILSKRFKLMCDIRSVVE
Ga0209092_1000000163F070820N/AMSFSSAKRRRIKPYARGTAFDINVAFDIRHFQRVKYGNVVKPYFPAVGTDEAFQVMEGEILMQCHKNSVRRYGDHQMHVFSFANGLSAGTHALNASAPESSQPEKRAVLSGLKYAGVAVTEFKPEKDIFEQGFVMTMAGLNTLFNNGKNTLYPGDLVCADIPNPADKGARKNRALQTGIPHEKLQFVIAPYHKLAEELGTHDKPDNALASRFIMGTALSYSRPGAPVDIVLHKCNVITHSSGAGEVPGAAAASAAKSKSGKKAKK

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