Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10000001 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 310762 |
Total Scaffold Genes | 339 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (12.68%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017048 | Metagenome / Metatranscriptome | 243 | Y |
F031650 | Metagenome / Metatranscriptome | 182 | Y |
F049219 | Metagenome / Metatranscriptome | 147 | Y |
F070820 | Metagenome / Metatranscriptome | 122 | Y |
F074304 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1000000110 | F017048 | GAG | MSSNFNYEPSKSSLRADTVVEFVNRSLLDFKMTEIPGMGPASIQKFSDHGIYTPAQIVAKFLSYVDSHDTTGLEICNSFYNWANPIMGKANTHNLTFAIANYCGEHGLFKLE |
Ga0209092_1000000112 | F031650 | N/A | MSDETMQPQEFEELKVAYQEAVPAIDALKHQLKSLNKEQKSRLNQIHAYMRENNIMSADIGGITIEREEKTTVSVSMKTLEEIIDNPADLEQYKRDHATTKEVLKVRKPKRRRTDDE |
Ga0209092_1000000129 | F049219 | AGG | MLAGESDKMLGHRLETLEKGVHVLDDRVKSLDDKVTHVIQMNSELMIQSNENFREMRGQLDAHRTELKKSIKQIKGNWSQQCYVISFAIGLTTWTIFMIWVLFA |
Ga0209092_10000001322 | F074304 | N/A | MQAGLAYVAGTAGKMVVTSAVSPVIGSTISLITSFRTLTHGAITLQQIIQKRDITCTLQTIEATMIALKCEKEPLKTASEHVVSCIHQIHQLLTKIADITASHNAGYISRWRQLVLDNEIEQLENLMDILSKRFKLMCDIRSVVE |
Ga0209092_1000000163 | F070820 | N/A | MSFSSAKRRRIKPYARGTAFDINVAFDIRHFQRVKYGNVVKPYFPAVGTDEAFQVMEGEILMQCHKNSVRRYGDHQMHVFSFANGLSAGTHALNASAPESSQPEKRAVLSGLKYAGVAVTEFKPEKDIFEQGFVMTMAGLNTLFNNGKNTLYPGDLVCADIPNPADKGARKNRALQTGIPHEKLQFVIAPYHKLAEELGTHDKPDNALASRFIMGTALSYSRPGAPVDIVLHKCNVITHSSGAGEVPGAAAASAAKSKSGKKAKK |
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