Scaffold Ga0209491_10588618

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209491_10588618

Scaffold Ga0209491_10588618

Overview

Basic Information
Taxon OID	3300027832 Open in IMG/M
Scaffold ID	Ga0209491_10588618 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	682
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017267	Metagenome	241	Y
F096684	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_105886181	F017267	GGA	MIVKTPGSQMGSPAAAEEGGEEVGGGRWESGERSEVQA
Ga0209491_105886182	F096684	N/A	VKYALFSQRDRKVYYKTAYGIPRPVSNMTVCGERQGDDAMGVQGSRARLAGMLAGGVWFRVVHAAVIIPADVDVSVVYSAVLGGIVRPL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.