Scaffold Ga0209491_10348262

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10348262
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1099
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014583	Metagenome	261	N
F024490	Metagenome	205	Y
F033324	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_103482621	F014583	GGA	MTTRDTRRNFFRLMDQTWPGVRSEFVAAMRQVQSQADMKALEAAIARGDVDAAFRALRFDAADL
Ga0209491_103482622	F033324	AGGCGG	MTDAAKRMMKEAKTEALFAAAHSAMPVEARKATLLAKMRRLHYNASIAQGFSPEDALILCMDCLAQE
Ga0209491_103482624	F024490	N/A	MLVWVSAVFVNAPVKSPPAIPSKALAGNDVMLEQFCHAYEKLVPAEVSIRGNDVMLEQ