Scaffold Ga0209491_10088467

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10088467
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2973
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003376	Metagenome	490	Y
F008805	Metagenome	327	Y
F050917	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100884672	F050917	GAGG	VVLVLNTCGENRARLRRGGIAVASCPSTEQLLDAEQLLAERLLAEQLLDAEHLSHRRLARTVVTNLESLLLRLAEKFSHVHITEKVLYTEVQRTGSVAYHRDPAAIGFDLPQRQTVTGMY
Ga0209491_100884674	F003376	GAG	VQGRSESRWHVIAHRRGGREARLARGGIREHDAFLGHGLRGPAGTERGGVLMAGGREGQGARKGNGVKRFRQIGAEMV
Ga0209491_100884675	F008805	GAG	VQGRSESRWRGIAHRRGGREVRLAWGGIREHDAFLGHKMRRPAGTERGGVSMAMGWEGQGARKPGNGVKGHRLPSPPCFVQNLHMYFGFLSQ