Scaffold Ga0209491_10080167

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10080167
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3158
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020325	Metagenome / Metatranscriptome	224	Y
F024964	Metagenome	203	Y
F057927	Metagenome	135	N
F074457	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_1008016711	F024964	GAGG	MIDMKDMNDKLYWTKGKEVGAERERNRISVMAQARICFDFHYLGKCDHSVCYGMAELIMTIKEAQDD
Ga0209491_1008016712	F074457	GGA	MSINELIATNGKVWYKAGQLAERSRAIRLAQHISVPSEPATGQPREMVFLDDLIAYLGDEDEK
Ga0209491_1008016713	F057927	GAGG	VNKTKQYQKVTNDFKQAAGLLRHDLVWSADLDAIRLDLAEYLEVKSGLSLANHPSLINIAQKLIATDNDL
Ga0209491_100801677	F020325	AGG	MMIRNWSDFKYEVADKLFGKELDEAYKMGMRIGSEYATRTLSFEVSLKRNLTLTKTEARGYDKAIAAVARVKPEIAKKTGASV