NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209491_10079841

Scaffold Ga0209491_10079841


Overview

Basic Information
Taxon OID3300027832 Open in IMG/M
Scaffold IDGa0209491_10079841 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026203Metagenome198Y
F043231Metagenome156Y
F053082Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209491_100798411F043231AGGMIETNWNRDGPRLSSDNLRRGCRLQDGDAVQGWSESRWRVIAHRRGGREARLARGGIREHDAFLGHEIRGPAGTGRSGVSMAGGREGQGARKGNGVRGHCLPSPPCCVQNLLM
Ga0209491_100798413F053082N/AMEKILSDFKWARHRLAHIFADGRSTGSHKRKVTLLEAPTGTLLFYYQDIKQDIVHTLLLEEYGVSKKWVIIMDRRQDLT
Ga0209491_100798414F026203GAGVENNFLTALTGQSTHQNLVKKSGLRRILFDMSCLQRILFHLKAGLRRILFIKNPLLNHSGMHFISSFLFCLPIL

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