Basic Information | |
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Taxon OID | 3300027832 Open in IMG/M |
Scaffold ID | Ga0209491_10079841 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3166 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Bonney | |||||||
Coordinates | Lat. (o) | -77.714 | Long. (o) | 162.445 | Alt. (m) | Depth (m) | 83 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026203 | Metagenome | 198 | Y |
F043231 | Metagenome | 156 | Y |
F053082 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209491_100798411 | F043231 | AGG | MIETNWNRDGPRLSSDNLRRGCRLQDGDAVQGWSESRWRVIAHRRGGREARLARGGIREHDAFLGHEIRGPAGTGRSGVSMAGGREGQGARKGNGVRGHCLPSPPCCVQNLLM |
Ga0209491_100798413 | F053082 | N/A | MEKILSDFKWARHRLAHIFADGRSTGSHKRKVTLLEAPTGTLLFYYQDIKQDIVHTLLLEEYGVSKKWVIIMDRRQDLT |
Ga0209491_100798414 | F026203 | GAG | VENNFLTALTGQSTHQNLVKKSGLRRILFDMSCLQRILFHLKAGLRRILFIKNPLLNHSGMHFISSFLFCLPIL |
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