Scaffold Ga0209491_10065572

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10065572
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3568
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002264	Metagenome / Metatranscriptome	576	Y
F003376	Metagenome	490	Y
F014945	Metagenome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100655721	F003376	GAG	VQGWSESRQRVVAHRRGGRETQLARSGIRVHDVFLGREIRGPAGTGRVGVSMAGGREGQGARKGNGMRGPCLP
Ga0209491_100655722	F002264	N/A	VAGRRGAVVEDDLYNKLKKLNVHAGKKDKILLVHVQRICEAHDTVMRSYYQQIHGSSGADATTPMENIGEQVYV
Ga0209491_100655726	F014945	N/A	MGKFIGIAAGAVVEKDGQVEGLGGLVQVEEKRRRAAPV