Scaffold Ga0209491_10047766

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10047766
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000489	Metagenome / Metatranscriptome	1084	Y
F012194	Metagenome	282	Y
F075724	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100477661	F012194	GGA	MKTEGKRPDGIVFTDANPRYAGKLDDPQGDDTTMLMQQVREVMTVTQEMTDESSWIWLTSEQMGFPLWSEFANENHGEAGSSKQCNDQRTDQTAFFLAPILTDFIRNTPRELYDEKLEDALEMLDSEWSKDDDTKTQCNRMNTSPLHRGNASNKNGPARAKRRMQWEAPSKPLAVDNPVLLPERELHAEIGINWFLDQEIPKGGYVRILAESLLWIERLGKTRIRTNEGLTTVMDDH
Ga0209491_100477666	F000489	GGAGG	VINKYHRTPYILEFKRSSDMNTDFLRVKEDEANEQHRRIIEALKTAATECTFEQINFVAERRGAVVEDDFYNKLEKLNVQAGKRDKMLLAHVQRICEAHDTVMRSYYQQIHTSVCERHSEDSGRLGLTRRR
Ga0209491_100477667	F075724	N/A	MTQERIMFSNPTPSKPRLSPAATMSDDTPSALTPPLHCASILQPAAPPQVVAFES