Scaffold Ga0209491_10044774

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10044774
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4472
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000291	Metagenome / Metatranscriptome	1361	Y
F000836	Metagenome / Metatranscriptome	868	Y
F031769	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100447744	F031769	GAG	MHFTGVLGTSAWAGVYVTQVCFYTSVHICEHTRCRLCTYLYMYICVYMHAYAYGCVCASMILFDALRRCC
Ga0209491_100447745	F000836	N/A	MRARVGVHMHSCRRILFICTVQTLYYMCVYHRCFLTLACVCRGGLEVGFVSACSWLALVTGVGGYVLAGVEIGVLSCIFLYFCGC
Ga0209491_100447746	F000291	AGGTGG	VLVYARTHTQTTWVLDVSPGVGRTPGEPEEPRSTKAQYTCSPHRCTQYICLYICCAAGFDDLG