Scaffold Ga0209491_10041481

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10041481
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4671
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. TMED19 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043231	Metagenome	156	Y
F043232	Metagenome	156	Y
F052394	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100414813	F043232	GAG	MSKPAALHTEGTAQVSEWFNTSDTAKKLYKGKSNSGIAVMITTKLQTGT
Ga0209491_100414814	F043231	N/A	MIETNWSRDVIRLQSDNLRRGCRLQDRGAVQGRSESRQHVVAHRRGGTEARLARGGIREHDACLVHEMRGPAETGRGGVSMARGREVQVARKRNGLKGHRLPSPPCCA
Ga0209491_100414817	F052394	GGAGG	MFSIQKSSTELNDASEPRWHFPTALSPEVHAEWGLYRILEYMGLHEILPPGAGQNRAKLRIDIEEYHIAYAIDFDDTDIDTFIARRPDGLAFDKEKNCVDSWNTRDQWTRMKTGQRRRSKRKTKDTAPI