Scaffold Ga0209491

Basic Information
Taxon OID	3300027832 Open in IMG/M
Scaffold ID	Ga0209491_10014282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027832 Open in IMG/M

Scaffold ID

Ga0209491_10014282 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8935
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8935

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (15.38%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)	Depth (m)	83
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Bonney

Coordinates

Lat. (^o)

-77.714

Long. (^o)

162.445

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F020855	Metagenome	221	N
F068214	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_1001428210	F068214	N/A	MSLQHMTVKLVPQTSNVIPAGKFIYTDETFLIQAPKYIQGEAFAQQGKALVPAHFSYGHINPDFTPIYTPPTRLAMNYNTYIYNSVTGYT
Ga0209491_1001428212	F001894	N/A	MLPIMNEYARISQIHYRYQQGENKEKQDAYATKKLSRLGYNLDANNTNKDVLTATKGDKVHINYTGTNVNNPRDLLSDVALGTGTQRSNPQFKQRRQKTRDIMRQYGDDKEYSLGGHSLGGSIALNTISQSKSIRDRVKEVHVFNPGYTKLFHESIKVDNPKELNKVNIHRVKGDIVSAHAHKETAFGNLFEYKHADKNSDLSDKHSLDTFIEQEL
Ga0209491_100142826	F003482	GGA	MLKMKQSNDFKQIIHNTRNLIKRDTEDIPGLNSLNDDNKGAWMEHDESNFHKMFEGLLDYCADEDCFDNLDWNTVNYKVYQADYYEERFPGFAPEVYTLLAKSTEEDNKVVDKRIPPLSVKHEKVVLNFN
Ga0209491_100142829	F020855	N/A	MYQLDTPYSSQIIFLNSENSVFKNIDGDGSYQYDFQTPIQLPTNCQMLISITDAQMPNIIPNVTSSNNTISFSIPTFSKFFTITIREDDGITDRVYNVQEWLAVVNEKITYEAVSQFSLYGGFNTSTSKITWYCNYPFKIISNVEYPTTCFDLIGFKKNRVNDVVYESEGILLSSVINPSYHITMPSCVNFSGTRFIFVKFKNISVNNLNSRGATDQAVVRIDNNAPFGFMIFYRPIEVHRFIINRQTINNLSFTLTDTQGKELNIFSNDAQITIKLEYMYKASMRSMEEGTINYELRKLSKVPMDKASIEGSYNPQTNEFIRE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209491_10014282

Overview

Ecosystem & Geography

Associated Families

Sequences