Scaffold Ga0209491_10005476

Overview

Basic Information

• Taxon OID: 3300027832
• Scaffold ID: Ga0209491_10005476
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18533
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F069735	Metagenome	123	N
F078617	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_1000547611	F069735	AGGTGG	MNSHAMQKMNELLIQFIGPQIEEIISVYATGKKDSEYFITIPEVDTLDLGLHEMASLVARSSNVYGRVARLAGMARAQYKILEGSYKKVYKANRVGKNEAEREVNALGAAENEYTALITAEAIVNLAESMEIAARVASESSRKLIDKIQSMQVASSREDKGYYTDKDFKTY
Ga0209491_1000547620	F004789	GGAG	MTLPGTYKNPTEKPCWTFCPSCNRCQDKGRYTKCNGCSGRYDPLGKTDPDPRDFCDCKNGNLRWVTQAGRFILTEFKTNPFKGTVKYDKKSEDERDWDSYVSDMRNKMDDPKFNPITIYE
Ga0209491_1000547631	F078617	AGG	MRVKVFLSGAIEEVGDYAYGWRETAVKLLDQRGFHAVNPMDFCLEETGCEPKEIVSKNTFMQARCDIVLVEYMIPNRAYIGTDYEMTLANHIYNQPVITFAHESYRQRKYLNYLSTKVVSSLEDAVEYISITYSHNK