Scaffold Ga0209359_10052220

Overview

Basic Information

• Taxon OID: 3300027830
• Scaffold ID: Ga0209359_10052220
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -38.0018
  • Long. (^o): -44.9985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F002137	Metagenome / Metatranscriptome	590	Y
F014025	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209359_100522201	F014025	GGA	MNQLDNYELSTIHYTISYYIDNANLDEDENEWLNLLKEKVDSIMESQAKYDMECG
Ga0209359_100522203	F001026	AGGAGG	MAKHTLVLDDLELTALITHLEGESEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTLGYEADKNPKVDFNLIQNQDRIYKYKSFK
Ga0209359_100522205	F002137	AGGAG	MKVRELIEALSHYDDDDDVTFYFLKNDTLTNCQLEDIGFYLDMGVEFTIQDTSEVMEEVD